UNDERSTANDING THE EFFECTS OF SALINITY AND VIBRIO HARVEYI ON THE GUT MICROBIOTA PROFILES OF LITOPENAEUS VANNAMEI
Zulaikha Mat Deris a, †, Shumpei Iehata b, †, Han Ming Gan c, Mhd Ikhwanuddin d, Musa Najiah b, Md Asaduzzaman e, Wang Min f, g, Liang Yantao f, g, Muhd Danish-Daniel a, Yeong Yik Sung a.g, Wong Li Lian a,g, *
a Institute of Marine Biotechnology, Universiti Malaysia Terengganu, 21030 Kuala Nerus,
Terengganu, Malaysia
b Faculty of Fisheries and Food Science, Universiti Malaysia Terengganu, Kuala Nerus,
Terengganu, Malaysia
c GeneSeq SDN BHD, 48300 Bandar Bukit Beruntung, Selangor Darul Ehsan, Malaysia
d Institute of Tropical Aquaculture and Fisheries Research, Universiti Malaysia Terengganu, 21030 Kuala Nerus, Terengganu, Malaysia
e Department of Marine Bioresource Science, Faculty of Fisheries, Chattogram Veterinary and Animal Sciences University, Khulshi 4225, Chattogram, Bangladesh
f College of Marine Life Sciences, Frontiers Science Center for Deep Ocean Multispheres and Earth System, Institute of Evolution and Marine Biodiversity, Ocean University of China, Qingdao, China
g UMT-OUC Joint Academic Center for Marine Studies, Universiti Malaysia Terengganu, 21030, Kuala Nerus, Malaysia
*Corresponding author: lilian@umt.edu.my
† These authors contributed equally to this work
Increasing shreds of evidence have revealed a positive correlation between gut microbiota and shrimp health, in which a healthy shrimp gut is consisted of a complex and stable microbial community. Given that both abiotic and biotic factors constantly regulate shrimp gut microbiota, the climatic changes affecting the levels of these factors could cause disease outbreaks. The goal of this study was to explore the effects of salinity levels and pathogenic Vibrio harveyi infection on the diversity, structure, composition, interspecies interaction, and functional pathways of Penaeus vannamei gut microbiota. Juvenile shrimp were cultured at 5 ppt, 20 ppt, and 30 ppt (control condition) for two months prior to Vibrio harveyi infection. After the 24-hour challenge test, genomic DNA was isolated from the shrimp gut, and subjected to the 16S rRNA metagenomic sequencing analysis. We observed that gut microbiota diversity of shrimp cultured at 5 ppt and 30 ppt were lower than 20 ppt after exposure to V. harveyi infection, suggesting that shrimp cultured at the two former salinity levels were more susceptible to disease infection. Network analysis also showed that shrimp cultured at 20 ppt exhibit a more stable bacterial network with complex interspecies interaction, even after induced by V. harveyi. Moreover, the presence of a high number of beneficial bacteria such as Pseudoruegeria, Rhodovulum, Ruegeria, Shimia and Lactobacillus in shrimp cultured at 20 ppt might have played a role in inhibiting the growth of V. harveyi and other potentially pathogenic bacteria. Bacterial functional pathway prediction has also detected a significantly higher biofilm formation process in the gut microbiota of shrimp cultured at 20 ppt, following V. harveyi infection. Collectively, our results suggested that 20 ppt is an optimal salinity that suppresses the growth of V. harveyi and potentially pathogenic bacteria in the shrimp gut, which could possibly minimize the risk of disease infection in shrimp for healthy shrimp production.
Keywords: Pacific white shrimp; climate change; 16S rRNA metagenomic sequencing; shrimp immunity; abiotic factors